0.9.6
API Reference
API Reference
Notebooks
Usage
Build network using user-defined resources
Stepwise connection: a focus on the INE algorithm
Connect to upstream components
Build network based on kinase-phosphosite interactions
Connect to downstream Gene Ontology terms.
Map tissue expression
Network comparison
Re-creating famous pathways from SIGNOR and WIKIPATHWAYS using NeKo
Build, manipulate, export and import networks
neko
Index
Edit on GitHub
Index
A
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B
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C
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D
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I
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M
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N
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P
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R
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S
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T
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V
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Y
A
add_edge() (neko.core.network.Network method)
,
[1]
add_node() (neko.core.network.Network method)
,
[1]
B
bfs_algorithm() (neko.core.network.Network method)
C
check_node() (neko.core.network.Network method)
check_nodes() (neko.core.network.Network method)
complete_connection() (neko.core.network.Network method)
,
[1]
connect_as_atopo() (neko.core.network.Network method)
connect_component() (neko.core.network.Network method)
,
[1]
connect_genes_to_phenotype() (neko.core.network.Network method)
,
[1]
connect_network_radially() (neko.core.network.Network method)
connect_nodes() (neko.core.network.Network method)
,
[1]
connect_subgroup() (neko.core.network.Network method)
,
[1]
connect_to_upstream_nodes() (neko.core.network.Network method)
,
[1]
convert_edgelist_into_genesymbol() (neko.core.network.Network method)
,
[1]
copy() (neko.core.network.Network method)
D
dfs_algorithm() (neko.core.network.Network method)
I
is_connected() (neko.core.network.Network method)
,
[1]
M
modify_node_name() (neko.core.network.Network method)
N
Network (class in neko.core.network)
P
print_my_paths() (neko.core.network.Network method)
R
remove_disconnected_nodes() (neko.core.network.Network method)
remove_edge() (neko.core.network.Network method)
remove_node() (neko.core.network.Network method)
,
[1]
remove_path() (neko.core.network.Network method)
remove_undefined_interactions() (neko.core.network.Network method)
render() (neko._visual.visualize_network.NetworkVisualizer method)
S
set_custom_edge_colors() (neko._visual.visualize_network.NetworkVisualizer method)
set_node_colors() (neko._visual.visualize_network.NetworkVisualizer method)
T
tissue_mapping() (neko._visual.visualize_network.NetworkVisualizer method)
V
vis_comparison() (neko._visual.visualize_network.NetworkVisualizer method)
Y
yfiles_visual() (neko._visual.visualize_network.NetworkVisualizer method)