0.9.12
API Reference
API Reference
Notebooks
Usage
Build network using user-defined resources
Stepwise connection: a focus on the INE algorithm
Connect to upstream components
Build network based on kinase-phosphosite interactions
Connect to downstream Gene Ontology terms.
Map tissue expression
Network comparison
Re-creating famous pathways from SIGNOR and WIKIPATHWAYS using NeKo
Build, manipulate, export and import networks
neko
Index
Edit on GitHub
Index
A
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B
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C
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D
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E
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F
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G
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L
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M
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N
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P
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R
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S
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T
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U
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V
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Y
A
add_edge() (neko.core.network.Network method)
,
[1]
add_node() (neko.core.network.Network method)
,
[1]
B
bfs_algorithm() (neko.core.network.Network method)
C
check_gene_list_format() (neko.core.network.Network method)
check_node() (neko.core.network.Network method)
check_nodes() (neko.core.network.Network method)
check_sign() (neko.core.network.Network method)
compare_states() (neko.core.network.Network method)
complete_connection() (neko.core.network.Network method)
,
[1]
connect_as_atopo() (neko.core.network.Network method)
connect_component() (neko.core.network.Network method)
,
[1]
connect_genes_to_phenotype() (neko.core.network.Network method)
,
[1]
connect_network_radially() (neko.core.network.Network method)
connect_nodes() (neko.core.network.Network method)
,
[1]
connect_subgroup() (neko.core.network.Network method)
,
[1]
connect_to_upstream_nodes() (neko.core.network.Network method)
,
[1]
convert_edgelist_into_genesymbol() (neko.core.network.Network method)
,
[1]
copy() (neko.core.network.Network method)
D
describe_states() (neko.core.network.Network method)
dfs_algorithm() (neko.core.network.Network method)
E
edges_as_objects() (neko.core.network.Network method)
F
filter_edges_by_provenance() (neko.core.network.Network method)
G
get_edge_provenance() (neko.core.network.Network method)
L
list_states() (neko.core.network.Network method)
M
mapping_node_identifier() (neko.core.network.Network method)
modify_node_name() (neko.core.network.Network method)
N
Network (class in neko.core.network)
nodes_as_objects() (neko.core.network.Network method)
P
print_my_paths() (neko.core.network.Network method)
R
redo() (neko.core.network.Network method)
remove_bimodal_interactions() (neko.core.network.Network method)
remove_disconnected_nodes() (neko.core.network.Network method)
remove_edge() (neko.core.network.Network method)
remove_node() (neko.core.network.Network method)
,
[1]
remove_path() (neko.core.network.Network method)
remove_undefined_interactions() (neko.core.network.Network method)
render() (neko._visual.visualize_network.NetworkVisualizer method)
restore_state() (neko.core.network.Network method)
S
save_state() (neko.core.network.Network method)
set_custom_edge_colors() (neko._visual.visualize_network.NetworkVisualizer method)
set_node_colors() (neko._visual.visualize_network.NetworkVisualizer method)
sync_edges_from_df() (neko.core.network.Network method)
sync_edges_to_df() (neko.core.network.Network method)
sync_nodes_from_df() (neko.core.network.Network method)
sync_nodes_to_df() (neko.core.network.Network method)
T
tissue_mapping() (neko._visual.visualize_network.NetworkVisualizer method)
U
undo() (neko.core.network.Network method)
V
vis_comparison() (neko._visual.visualize_network.NetworkVisualizer method)
Y
yfiles_visual() (neko._visual.visualize_network.NetworkVisualizer method)