0.9.5
API Reference
API Reference
Network Class
Method Details
neko.core.network.Network.add_edge
neko.core.network.Network.remove_node
neko.core.network.Network.add_node
neko.core.network.Network.complete_connection
neko.core.network.Network.connect_component
neko.core.network.Network.connect_genes_to_phenotype
neko.core.network.Network.connect_nodes
neko.core.network.Network.connect_subgroup
neko.core.network.Network.connect_to_upstream_nodes
neko.core.network.Network.convert_edgelist_into_genesymbol
neko.core.network.Network.is_connected
NetworkVisualizer Class Methods
neko._visual.visualize_network.NetworkVisualizer.tissue_mapping
neko._visual.visualize_network.NetworkVisualizer.render
neko._visual.visualize_network.NetworkVisualizer.yfiles_visual
neko._visual.visualize_network.NetworkVisualizer.vis_comparison
Other Modules
Notebooks
Usage
Build network using user-defined resources
Stepwise connection: a focus on the INE algorithm
Connect to upstream components
Build network based on kinase-phosphosite interactions
Connect to downstream Gene Ontology terms.
Map tissue expression
Network comparison
Re-creating famous pathways from SIGNOR and WIKIPATHWAYS using NeKo
neko
API Reference
neko._visual.visualize_network.NetworkVisualizer.yfiles_visual
Edit on GitHub
neko._visual.visualize_network.NetworkVisualizer.yfiles_visual
NetworkVisualizer.
yfiles_visual
(
graph_layout
,
directed
)