Contents

API Reference

• API Reference
  • Network Class
  • Method Details
  • Other Modules

Notebooks

• Usage
• Build network using user-defined resources
• Stepwise connection: a focus on the INE algorithm
• Connect to upstream components
• Build network based on kinase-phosphosite interactions
• Connect to downstream Gene Ontology terms.
• Map tissue expression
• Network comparison
• Re-creating famous pathways from SIGNOR and WIKIPATHWAYS using NeKo
• Build, manipulate, export and import networks